sschet/bert-base-uncased_clinical-ner
Token Classification
•
Updated
•
1.06k
•
1
id
string
| tokens
sequence
| ner_tags
sequence
|
---|---|---|
"0" | [
"Comparison",
"with",
"alkaline",
"phosphatases",
"and",
"5",
"-",
"nucleotidase"
] | [
0,
0,
1,
2,
0,
1,
2,
2
] |
"1" | [
"Pharmacologic",
"aspects",
"of",
"neonatal",
"hyperbilirubinemia",
"."
] | [
0,
0,
0,
0,
0,
0
] |
"2" | [
"When",
"CSF",
"[",
"HCO3",
"-",
"]",
"is",
"shown",
"as",
"a",
"function",
"of",
"CSF",
"PCO2",
"the",
"data",
"of",
"K",
"-",
"depleted",
"rats",
"are",
"no",
"longer",
"displaced",
"when",
"compared",
"to",
"controls",
"but",
"still",
"have",
"a",
"significantly",
"greater",
"slope",
"(",
"1",
".",
"21",
"+",
"/",
"-",
"0",
".",
"23",
"vs",
"."
] | [
0,
0,
0,
0,
0,
0,
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0,
0,
0,
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0,
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0,
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0,
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0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"3" | [
"Flurazepam",
"thus",
"appears",
"to",
"be",
"an",
"effective",
"hypnotic",
"drug",
"with",
"the",
"optimum",
"dose",
"for",
"use",
"in",
"general",
"practice",
"being",
"15",
"mg",
"at",
"night",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"4" | [
"Beta",
"blocking",
"agents",
"."
] | [
0,
0,
0,
0
] |
"5" | [
"When",
"extracorporeal",
"CO2",
"removal",
"approximated",
"CO2",
"production",
"(",
"VCO2",
")",
",",
"alveolar",
"ventilation",
"almost",
"ceased",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"6" | [
"Intravenous",
"administration",
"(",
"25",
"mg",
"/",
"kg",
")",
"of",
"carbonic",
"anhydrase",
"inhibitors",
"(",
"acetazolamide",
",",
"methazolamide",
",",
"dichlorphenamide",
",",
"sulthiame",
")",
"induced",
"an",
"early",
"important",
"rise",
"of",
"cortical",
"p",
"O2",
",",
"which",
"is",
"not",
"dependent",
"on",
"increase",
"of",
"p",
"O2",
"and",
"p",
"CO2",
"and",
"decrease",
"of",
"pH",
"in",
"arterial",
"blood",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"7" | [
"Teratological",
"study",
"of",
"etoperidone",
"in",
"the",
"rat",
"and",
"rabbit",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"8" | [
"Colorectal",
"polyps",
"should",
"be",
"removed",
"endoscopically",
"whenever",
"possible",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"9" | [
"The",
"variable",
"HMG",
"dosage",
"regimen",
"was",
"found",
"to",
"offer",
"no",
"advantages",
"when",
"compared",
"with",
"our",
"standard",
"daily",
"dosage",
"regimen",
"."
] | [
0,
0,
1,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"10" | [
"When",
"the",
"CO2",
"content",
"reached",
"9",
"Vol",
"%",
"the",
"animals",
"became",
"apathic",
"and",
"lost",
"body",
"weight",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"11" | [
"Serum",
"gamma",
"glutamyltransferase",
"in",
"the",
"diagnosis",
"of",
"liver",
"disease",
"in",
"cattle",
"."
] | [
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"12" | [
"By",
"contrast",
",",
"secretory",
"HI",
"antibodies",
"were",
"not",
"demonstrated",
"at",
"the",
"onset",
"of",
"illness",
"in",
"any",
"of",
"the",
"patients",
",",
"but",
"their",
"formation",
"started",
"early",
"and",
"the",
"antibodies",
"reached",
"maximal",
"levels",
"about",
"10",
"days",
"after",
"onset",
"of",
"illness",
"."
] | [
0,
0,
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"13" | [
"With",
"the",
"exception",
"of",
"virus",
"assay",
"and",
"quantitation",
",",
"these",
"methods",
"are",
"simple",
"and",
"inexpensive",
"enough",
"to",
"be",
"done",
"in",
"typical",
"shellfish",
"microbiology",
"laboratories",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"14" | [
"Characteristics",
"of",
"lipase",
"activity",
"."
] | [
0,
0,
1,
0,
0
] |
"15" | [
"Takayasu",
"'",
"s",
"disease",
":",
"association",
"with",
"HLA",
"-",
"B5",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
0
] |
"16" | [
"SGPT",
",",
"SGOT",
",",
"and",
"alkaline",
"phosphatase",
"concentrations",
"were",
"essentially",
"normal",
"in",
"all",
"subjects",
"."
] | [
1,
0,
1,
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0
] |
"17" | [
"Gamma",
"glutamyl",
"transpeptidase",
"(",
"GGTP",
")",
"activity",
"in",
"the",
"seminal",
"fluid"
] | [
1,
2,
2,
0,
1,
0,
0,
0,
0,
0,
0
] |
"18" | [
"Patients",
"with",
"Parkinson",
"'",
"s",
"disease",
"showed",
"a",
"relatively",
"high",
"incidence",
"to",
"psychoses",
"during",
"drug",
"treatment",
"(",
"51",
".",
"47",
"%",
")",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"19" | [
"Selective",
"stimulation",
"of",
"central",
"alpha",
"-",
"autoreceptors",
"following",
"treatment",
"with",
"alpha",
"-",
"methyldopa",
"and",
"FLA",
"136",
"."
] | [
0,
0,
0,
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"20" | [
"Anti",
"-",
"anxiety",
"action",
"of",
"diazepam",
"after",
"intra",
"-",
"amygdaloid",
"application",
"in",
"the",
"rat",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"21" | [
"Abstracts",
"."
] | [
0,
0
] |
"22" | [
"Removal",
"of",
"thick",
",",
"permanently",
"altered",
"mucoas",
"is",
"recommended",
"even",
"in",
"the",
"absence",
"of",
"squamous",
"epithelium",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"23" | [
"An",
"IgG",
"monoclonal",
"gammopathy",
"was",
"present",
"in",
"the",
"serum",
"of",
"4",
"patients",
"and",
"Bence",
"-",
"Joanes",
"proteinuria",
"was",
"found",
"in",
"1",
"patient",
"."
] | [
0,
1,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"24" | [
"Studies",
"on",
"immunoglobulin",
"E",
":",
"the",
"impact",
"of",
"a",
"sojourn",
"with",
"Professor",
"Dan",
"H",
"."
] | [
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"25" | [
"Peroxydase",
"reaction",
"stains",
"were",
"negative",
",",
"chloroacetate",
"esterase",
"were",
"strongly",
"positive",
"."
] | [
1,
0,
0,
0,
0,
0,
1,
2,
0,
0,
0,
0
] |
"26" | [
"Ten",
"out",
"-",
"patients",
"with",
"pustulosis",
"palmaris",
"et",
"plantaris",
"were",
"examined",
"with",
"direct",
"immunofluorescence",
"(",
"IF",
")",
"technique",
"for",
"deposition",
"of",
"fibrinogen",
",",
"fibrin",
"or",
"its",
"degradation",
"products",
"(",
"FR",
"-",
"antigen",
")",
"in",
"affected",
"and",
"unaffected",
"skin",
",",
"together",
"with",
"heparin",
"-",
"precipitable",
"fraction",
"(",
"HPF",
")",
",",
"cryoglobulin",
"and",
"total",
"plasma",
"fibrinogen",
"in",
"the",
"blood",
"."
] | [
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1,
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"27" | [
"Of",
"600",
"mediastinoscopies",
"carried",
"out",
"from",
"1966",
"to",
"1973",
",",
"479",
"were",
"performed",
"to",
"assess",
"the",
"operability",
"of",
"a",
"pulmonary",
"carcinoma",
"."
] | [
0,
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0,
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0,
0,
0,
0,
0,
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0,
0,
0,
0,
0
] |
"28" | [
"A",
"mixture",
"of",
"human",
"albumin",
"5",
"%",
"and",
"hydroxy",
"-",
"ethyl",
"-",
"starch",
"was",
"used",
"as",
"a",
"solution",
"for",
"dilution",
"."
] | [
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"29" | [
"In",
"the",
"matched",
"control",
"group",
"the",
"acquisition",
"-",
"rate",
"of",
"both",
"symptomatic",
"and",
"asymptomatic",
"0acteriuria",
"was",
"over",
"12",
"%",
",",
"a",
"figure",
"similar",
"to",
"the",
"percentage",
"of",
"women",
"present",
"in",
"the",
"practice",
"population",
"during",
"one",
"year",
"with",
"transient",
",",
"symptomatic",
",",
"and",
"persistent",
"A",
".",
"B",
"."
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0,
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] |
"30" | [
"Late",
"complications",
"of",
"catheterisation",
"for",
"intravenous",
"nutrition",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0
] |
"31" | [
"Prenatal",
"diagnosis",
"of",
"galactosaemia",
"."
] | [
0,
0,
0,
0,
0
] |
"32" | [
"Sings",
"which",
"are",
"indicative",
"of",
"metaplastic",
"erythropoiesis",
"are",
"absent",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"33" | [
"False",
"positive",
"amniotic",
"fluid",
"alpha",
"fetoprotein",
"levels",
"resulting",
"from",
"contamination",
"with",
"fetal",
"blood",
":",
"results",
"of",
"an",
"experiment",
"."
] | [
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0,
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0,
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0,
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0,
0,
0
] |
"34" | [
"Serum",
"-",
"ferritin",
"in",
"diagnosis",
"of",
"haemochromatosis",
"."
] | [
0,
0,
1,
0,
0,
0,
0,
0
] |
"35" | [
"In",
"2",
"subjects",
"the",
"phytomitogen",
"reactivity",
"of",
"the",
"lymphocytes",
"was",
"improved",
"after",
"treatment",
"."
] | [
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"36" | [
"Patients",
"at",
"risk",
"of",
"hypothyroidism",
"."
] | [
0,
0,
0,
0,
0,
0
] |
"37" | [
"Albumin",
"and",
"cyclic",
"AMP",
"levels",
"in",
"peritoneal",
"fluids",
"in",
"the",
"child"
] | [
1,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
"38" | [
"Preface",
"."
] | [
0,
0
] |
"39" | [
"Thirty",
"-",
"five",
"strains",
"of",
"Legionnaires",
"'",
"disease",
"bacteria",
"were",
"shown",
"to",
"belong",
"in",
"four",
"distinct",
"serologic",
"groups",
"on",
"the",
"basis",
"of",
"findings",
"obtained",
"with",
"direct",
"fluorescent",
"antibody",
"testing",
"."
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] |
"40" | [
"On",
"the",
"other",
"hand",
"factor",
"IX",
"activity",
"is",
"decreased",
"in",
"coumarin",
"treatment",
"with",
"factor",
"IX",
"antigen",
"remaining",
"normal",
"."
] | [
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] |
"41" | [
"The",
"concentration",
"of",
"alpha",
"2",
"-",
"macroglobulin",
",",
"alpha",
"1",
"-",
"antitrypsin",
",",
"plasminogen",
",",
"C3",
"-",
"complement",
",",
"fibrinogen",
"degradation",
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"FDP",
")",
"and",
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"activity",
",",
"were",
"studied",
"in",
"the",
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"humour",
"and",
"serum",
"from",
"nine",
"patients",
"with",
"Fuchs",
"'",
"endothelial",
"dystrophy",
",",
"17",
"patients",
"with",
"uncomplicated",
"senile",
"cataract",
"and",
"in",
"the",
"secondary",
"aqueous",
"from",
"six",
"cataract",
"patients",
"."
] | [
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] |
"42" | [
"Only",
"17",
"%",
"of",
"all",
"patients",
"admitted",
"it",
"at",
"all",
"times",
"."
] | [
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[More Information Needed]
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id
: Sentence identifier. tokens
: Array of tokens composing a sentence. ner_tags
: Array of tags, where 0
indicates no disease mentioned, 1
signals the first token of a disease and 2
the subsequent disease tokens.[More Information Needed]
[More Information Needed]
[More Information Needed]
[More Information Needed]
[More Information Needed]
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Thanks to @mahajandiwakar for adding this dataset.